Target network Eight communities around hub targets. Illustrative.
Service 05
Network pharmacology
How a compound or extract reaches its targets: predicted targets, disease overlap, protein–protein interaction networks, hub genes and pathway enrichment, drawn as publication-grade Cytoscape figures. About 3 days.
What we do
The work, step by step
- 01
Compound and disease targets
Target prediction for your compounds and collection of disease-associated genes, and their overlap.
- 02
Protein–protein interaction network
Interaction networks of the shared targets, with hub genes ranked by network topology.
- 03
Functional enrichment
GO and KEGG pathway enrichment of the core targets.
- 04
Compound–target–pathway network
The full picture in one Cytoscape figure.
- 05
Docking validation
Optional: the key compound–hub target pairs checked by molecular docking.
You receive
- Target and hub-gene tables
- Enrichment tables and plots
- Cytoscape networks and figures
- A written methods and results section
Typical turnaround
3 days for one compound set
Counted from the day we receive your files. Larger studies get their own timeline with the quote. All turnaround times
Tools
Cytoscape for networks, R for analysis and plotting, and standard target-prediction and enrichment databases.
Who works on it
Dr. Fariha Javaid, with the BioInfoX research team. We take full responsibility for every analysis we perform.
Start
Send us your system and your question.
Structures, sequences or data, your research question and your deadline. We reply with the scope, the timeline and a quote.